Transcript: lnc-TRAPPC6B-1:1

Basic information

LNCipedia transcript ID: lnc-TRAPPC6B-1:1 
LNCipedia gene ID: lnc-TRAPPC6B-1
Ensembl Gene ID: ENSG00000259083
Ensembl Transcript ID: ENST00000556537
Location (hg38): chr14:39174885-39175880
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 530 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556537; ENST00000556537.1; RP11-407N17.4-001; OTTHUMT00000410313.1; NONHSAT036519
Alternative gene names: ENSG00000259083; RP11-407N17.4; ENSG00000259083.1; OTTHUMG00000170768.1; AL132639.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.1256 non-coding 
CPAT coding probability 9.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAPPC6B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAPPC6B-1:1
3.1 lnc-TRAPPC6B-1:1
4.0 lnc-TRAPPC6B-1:1
4.1 lnc-TRAPPC6B-1:1
5.0 lnc-TRAPPC6B-1:1
5.1 lnc-EFS-193:3
5.2 lnc-TRAPPC6B-1:1