Transcript: lnc-TRAPPC6A-3:3

Basic information

LNCipedia transcript ID: lnc-TRAPPC6A-3:3 
LNCipedia gene ID: lnc-TRAPPC6A-3
Location (hg38): chr19:45238632-45245370
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 460 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000590022.1
Alternative gene names: ENSG00000267045.1; AC006126.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.8288 non-coding 
CPAT coding probability 83.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRAPPC6A-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXOC3L2-1:1
4.0 lnc-EXOC3L2-1:1
4.1 lnc-EXOC3L2-1:1
5.0 lnc-EXOC3L2-1:1
5.1 lnc-GPR4-12:3
5.2 lnc-TRAPPC6A-3:3