Transcript: lnc-TPX2-4:1

Basic information

LNCipedia transcript ID: lnc-TPX2-4:1 
LNCipedia gene ID: lnc-TPX2-4
Location (hg38): chr20:31723764-31724387
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 624 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000052995.1|FTMT28000001781.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -394.579 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPX2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TPX2-4:1
5.0 lnc-TPX2-4:1
5.1 lnc-BPIFB2-24:1
5.2 lnc-TPX2-4:1