Transcript: lnc-TPTE2-2:1

Basic information

LNCipedia transcript ID: lnc-TPTE2-2:1 
LNCipedia gene ID: lnc-TPTE2-2
Location (hg38): chr13:19404609-19405099
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 280 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000442144; ENST00000442144.1; RP11-385E5.7-001; OTTHUMT00000044020.1; NONHSAT032271
Alternative gene names: ENSG00000230057; RP11-385E5.7; ENSG00000230057.1; OTTHUMG00000016491.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.3192 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPTE2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TPTE2-2:1
3.1 lnc-TPTE2-2:1
4.0 lnc-TPTE2-2:1
4.1 lnc-TPTE2-2:1
5.0 lnc-TPTE2-2:1
5.1 lnc-ZDHHC20-42:1
5.2 lnc-TPTE2-2:1