Transcript: lnc-TPST1-1:9

Basic information

LNCipedia transcript ID: lnc-TPST1-1:9 
LNCipedia gene ID: lnc-TPST1-1
Location (hg38): chr7:66493709-66495448
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 223 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1232:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.0726 non-coding 
CPAT coding probability 4.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPST1-1:9 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TPST1-1:9
4.1 lnc-TPST1-1:9
5.0 lnc-TPST1-1:9
5.1 lnc-TPST1-8:9
5.2 lnc-TPST1-1:9