Transcript: lnc-TPST1-1:3

Basic information

LNCipedia transcript ID: lnc-TPST1-1:3 
LNCipedia gene ID: lnc-TPST1-1
Ensembl Gene ID: ENSG00000237310
Ensembl Transcript ID: ENST00000452565
Location (hg38): chr7:66493786-66495472
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000452565; ENST00000452565.1; GS1-124K5.4-002; OTTHUMT00000344728.1
Alternative gene names: ENSG00000237310; GS1-124K5.4; ENSG00000237310.1; OTTHUMG00000156593.1; AC008267.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.0726 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPST1-1:3 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TPST1-1:3
3.1 lnc-TPST1-1:3
4.0 lnc-TPST1-1:3
4.1 lnc-TPST1-1:3
5.0 lnc-TPST1-1:3
5.1 lnc-TPST1-8:13
5.2 lnc-TPST1-1:3