Transcript: lnc-TPO-1:2

Basic information

LNCipedia transcript ID: lnc-TPO-1:2 
LNCipedia gene ID: lnc-TPO-1
Ensembl Gene ID: ENSG00000283766
Ensembl Transcript ID: ENST00000640435
Location (hg38): chr2:1552445-1554701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 762 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00004663; NONHSAT068648; ENST00000640435.1
Alternative gene names: XLOC_001313; linc-TTC15-9; ENSG00000283766.1; AC141930.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.9621 non-coding 
CPAT coding probability 11.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPO-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TPO-1:1
3.1 lnc-TPO-1:2
4.0 lnc-TPO-1:2
4.1 lnc-TPO-1:2
5.0 lnc-TPO-1:2
5.1 lnc-SNX17-281:1
5.2 lnc-TPO-1:2