Transcript: lnc-TPBGL-3:1

Basic information

LNCipedia transcript ID: lnc-TPBGL-3:1 
LNCipedia gene ID: lnc-TPBGL-3
Ensembl Gene ID: ENSG00000254963
Ensembl Transcript ID: ENST00000529304
Location (hg38): chr11:75264289-75265170
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 216 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529304.1; CTD-2562J17.9-001; OTTHUMT00000384157.1; NONHSAT023090
Alternative gene names: ENSG00000254963.1; CTD-2562J17.9; OTTHUMG00000165447.1; AP001972.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -638.6299 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPBGL-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLCO2B1-3:1
4.0 lnc-SLCO2B1-3:1
4.1 lnc-SLCO2B1-3:1
5.0 lnc-SLCO2B1-3:1
5.1 lnc-TCIRG1-162:1
5.2 lnc-TPBGL-3:1