Transcript: lnc-TP53TG3F-2:1

Basic information

LNCipedia transcript ID: lnc-TP53TG3F-2:1 
LNCipedia gene ID: lnc-TP53TG3F-2
Location (hg38): chr16:33537726-33541142
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2270 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024372; NONHSAT142087
Alternative gene names: XLOC_011696; linc-ORC6-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6339 non-coding 
CPAT coding probability 52.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TP53TG3F-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-1277H1.1.1-1:1
3.1 lnc-RP11-1277H1.1.1-2:1
4.0 lnc-RP11-1277H1.1.1-2:1
4.1 lnc-RP11-1277H1.1.1-2:1
5.0 lnc-RP11-1277H1.1.1-2:1
5.1 lnc-ZNF646-100:1
5.2 lnc-TP53TG3F-2:1