Transcript: lnc-TOX3-1:9

Basic information

LNCipedia transcript ID: lnc-TOX3-1:9 
LNCipedia gene ID: lnc-TOX3-1
Location (hg38): chr16:52051813-52078532
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00025004
Alternative gene names: XLOC_011940; linc-SALL1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -480.4847 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOX3-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-152O14.5.1-1:1
3.1 lnc-RP11-152O14.5.1-1:1
4.0 lnc-RP11-152O14.5.1-1:1
4.1 lnc-RP11-152O14.5.1-1:1
5.0 lnc-RP11-152O14.5.1-1:1
5.1 lnc-CFAP20-119:1
5.2 lnc-TOX3-1:9