Transcript: lnc-TOX3-1:19

Basic information

LNCipedia transcript ID: lnc-TOX3-1:19 
LNCipedia gene ID: lnc-TOX3-1
Location (hg38): chr16:52026354-52027131
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 234 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00024649
Alternative gene names: XLOC_011939; linc-SALL1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1334.5271 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOX3-1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-152O14.2.1-2:1
3.1 lnc-RP11-152O14.2.1-2:1
4.0 lnc-RP11-152O14.5.1-1:12
4.1 lnc-RP11-152O14.5.1-1:12
5.0 lnc-RP11-152O14.5.1-1:12
5.1 lnc-CFAP20-119:11
5.2 lnc-TOX3-1:19