Transcript: lnc-TOX3-1:18

Basic information

LNCipedia transcript ID: lnc-TOX3-1:18 
LNCipedia gene ID: lnc-TOX3-1
Ensembl Gene ID: ENSG00000261190
Ensembl Transcript ID: ENST00000564911
Location (hg38): chr16:52026352-52027370
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 475 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT142493; ENST00000564911.4
Alternative gene names: ENSG00000261190.5; C16orf97


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.9409 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOX3-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-152O14.5.1-1:7
4.0 lnc-RP11-152O14.5.1-1:7
4.1 lnc-RP11-152O14.5.1-1:7
5.0 lnc-RP11-152O14.5.1-1:7
5.1 lnc-CFAP20-119:10
5.2 lnc-TOX3-1:18