Transcript: lnc-TOR1AIP2-5:1

Basic information

LNCipedia transcript ID: lnc-TOR1AIP2-5:1 
LNCipedia gene ID: lnc-TOR1AIP2-5
Ensembl Gene ID: ENSG00000272906
Ensembl Transcript ID: ENST00000610272
Location (hg38): chr1:179881607-179882595
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 989 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT008225; ENST00000610272.1
Alternative gene names: ENSG00000272906.1; RP11-533E19.7; AL353708.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.6249 non-coding 
CPAT coding probability 17.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOR1AIP2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOR1AIP2-5:1
4.0 lnc-TOR1AIP2-5:1
4.1 lnc-TOR1AIP2-5:1
5.0 lnc-TOR1AIP2-5:1
5.1 lnc-SH2D1B-183:1
5.2 lnc-TOR1AIP2-5:1