Transcript: lnc-TOPAZ1-4:1

Basic information

LNCipedia transcript ID: lnc-TOPAZ1-4:1 
LNCipedia gene ID: lnc-TOPAZ1-4
Location (hg38): chr3:44399114-44404507
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1123 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_2357_chr3:44440605-44445999_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7999 non-coding 
CPAT coding probability 7.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TOPAZ1-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf77-4:1
4.0 lnc-C3orf77-4:1
4.1 lnc-C3orf77-4:1
5.0 lnc-C3orf77-4:1
5.1 lnc-KLHL40-42:1
5.2 lnc-TOPAZ1-4:1