Transcript: lnc-TNXB-1:1

Basic information

LNCipedia transcript ID: lnc-TNXB-1:1 
LNCipedia gene ID: lnc-TNXB-1
Ensembl Gene ID: ENSG00000284829
Ensembl Transcript ID: ENST00000494022
Location (hg38): chr6:32098176-32117610
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 320 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT108875; ENST00000494022.1
Alternative gene names: ENSG00000284829.1; AL662884.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNXB-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATF6B-1:2
4.0 lnc-TNXB-1:1
4.1 lnc-TNXB-1:1
5.0 lnc-TNXB-1:1
5.1 lnc-DXO-1:1
5.2 lnc-TNXB-1:1