Transcript: lnc-TNS3-2:9

Basic information

LNCipedia transcript ID: lnc-TNS3-2:9 
LNCipedia gene ID: lnc-TNS3-2
Ensembl Gene ID: ENSG00000233539
Ensembl Transcript ID: ENST00000451905
RefSeq ID: NR_134575
Location (hg38): chr7:46687879-46697122
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1947 bp
Exons: 3
Sources: Broad Institute; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00012907; ENST00000451905.4; NR_134575.1
Alternative gene names: XLOC_006434; linc-IGFBP3-2; ENSG00000233539.5; AC011294.3; AC011294.1; LOC730338


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.3646 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNS3-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNS3-1:1
3.1 lnc-TNS3-2:1
4.0 lnc-AC011294.3.1-2:4
4.1 lnc-AC011294.3.1-2:4
5.0 lnc-AC011294.3.1-2:4
5.1 lnc-TNS3-2:6
5.2 lnc-TNS3-2:9