Transcript: lnc-TNK2-11:1

Basic information

LNCipedia transcript ID: lnc-TNK2-11:1 
LNCipedia gene ID: lnc-TNK2-11
Location (hg38): chr3:195770365-195786416
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3183 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_2562_chr3:195497235-195506506_ovary
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.8544 non-coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TNK2-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNK2-11:1
4.0 lnc-TNK2-11:1
4.1 lnc-TNK2-11:1
5.0 lnc-TNK2-11:1
5.1 lnc-PPP1R2-13:1
5.2 lnc-TNK2-11:1