Transcript: lnc-TNFRSF14-2:2

Basic information

LNCipedia transcript ID: lnc-TNFRSF14-2:2 
LNCipedia gene ID: lnc-TNFRSF14-2
Location (hg38): chr1:2566410-2569888
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1297 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456687.3
Alternative gene names: ENSG00000225931.3; RP3-395M20.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.0439 non-coding 
CPAT coding probability 27.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TNFRSF14-2:2 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFRSF14-2:2
4.0 lnc-TNFRSF14-2:2
4.1 lnc-TNFRSF14-2:2
5.0 lnc-TNFRSF14-2:2
5.1 lnc-VAMP3-63:2
5.2 lnc-TNFRSF14-2:2