Transcript: lnc-TNFRSF11B-1:1

Basic information

LNCipedia transcript ID: lnc-TNFRSF11B-1:1 
LNCipedia gene ID: lnc-TNFRSF11B-1
Ensembl Gene ID: ENSG00000254278
Ensembl Transcript ID: ENST00000518362
RefSeq ID: NR_134297
Location (hg38): chr8:119062942-119068782
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1408 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000518362.1; RP11-278I4.2-001; OTTHUMT00000381226.1; NONHSAT128420; NR_134297.1
Alternative gene names: ENSG00000254278.1; RP11-278I4.2; OTTHUMG00000164972.1; AC107953.2; LOC101927513


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.2732 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFRSF11B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFRSF11B-1:1
4.0 lnc-TNFRSF11B-1:1
4.1 lnc-TNFRSF11B-1:1
5.0 lnc-TNFRSF11B-1:1
5.1 lnc-TNFRSF11B-1:1
5.2 lnc-TNFRSF11B-1:1