Transcript: lnc-TNFRSF10A-1:3

Basic information

LNCipedia transcript ID: lnc-TNFRSF10A-1:3 
LNCipedia gene ID: lnc-TNFRSF10A-1
Location (hg38): chr8:23225220-23230103
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000519563.1; RP11-1149O23.4-002; OTTHUMT00000375454.1; NONHSAT125545
Alternative gene names: ENSG00000250714.2; RP11-1149O23.4; OTTHUMG00000163785.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.2174 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFRSF10A-1:3 no no no no

Available literature

  1. Zheng (2016), Long non-coding RNA LOC389641 promotes progression of pancreatic ductal adenocarcinoma and increases cell invasion by regulating E-cadherin in a TNFRSF10A-related manner., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFRSF10A-1:3
4.0 lnc-TNFRSF10A-1:3
4.1 lnc-TNFRSF10A-1:3
5.0 lnc-TNFRSF10A-1:3
5.1 lnc-ENTPD4-3:3
5.2 lnc-TNFRSF10A-1:3