Transcript: lnc-TNFAIP6-2:14

Basic information

LNCipedia transcript ID: lnc-TNFAIP6-2:14 
LNCipedia gene ID: lnc-TNFAIP6-2
RefSeq ID: NR_110247
Location (hg38): chr2:150628897-150635357
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110247; NR_110247.1
Alternative gene names: LOC101929282


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.3936 non-coding 
CPAT coding probability 4.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP6-2:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFAIP6-2:14
4.0 lnc-TNFAIP6-2:14
4.1 lnc-TNFAIP6-2:14
5.0 lnc-TNFAIP6-2:14
5.1 lnc-KCNJ3-31:10
5.2 lnc-TNFAIP6-2:14