Transcript: lnc-TNFAIP3-5:6

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-5:6 
LNCipedia gene ID: lnc-TNFAIP3-5
Location (hg38): chr6:137415669-137418412
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 398 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011961; NONHSAT115156
Alternative gene names: XLOC_005475; linc-TNFAIP3-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.3039 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFAIP3-6:1
3.1 lnc-TNFAIP3-6:1
4.0 lnc-TNFAIP3-5:6
4.1 lnc-TNFAIP3-5:6
5.0 lnc-TNFAIP3-5:6
5.1 lnc-TBPL1-63:2
5.2 lnc-TNFAIP3-5:6