Transcript: lnc-TNFAIP3-3:5

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-3:5 
LNCipedia gene ID: lnc-TNFAIP3-3
RefSeq ID: NR_125867
Location (hg38): chr6:137665646-137674554
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 520 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125867; NR_125867.1
Alternative gene names: LOC102723649


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.2817 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-3:5 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNFAIP3-3:5
4.0 lnc-TNFAIP3-3:5
4.1 lnc-TNFAIP3-3:5
5.0 lnc-TNFAIP3-3:5
5.1 lnc-TBPL1-69:8
5.2 lnc-TNFAIP3-3:5