Transcript: lnc-TNFAIP3-3:3

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-3:3 
LNCipedia gene ID: lnc-TNFAIP3-3
Ensembl Gene ID: ENSG00000230533
Ensembl Transcript ID: ENST00000440397
Location (hg38): chr6:137673460-137674554
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011381; ENST00000440397; ENST00000440397.1; RP11-95M15.1-001; OTTHUMT00000042407.1; NONHSAT115169
Alternative gene names: XLOC_005478; linc-TNFAIP3-2; ENSG00000230533; RP11-95M15.1; ENSG00000230533.1; OTTHUMG00000015659.1; ENSG00000230533.2; AL357060.1; ENSG00000230533.3; AL356234.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.2817 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-3:3 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFAIP3-3:3
3.1 lnc-TNFAIP3-3:3
4.0 lnc-TNFAIP3-3:3
4.1 lnc-TNFAIP3-3:3
5.0 lnc-TNFAIP3-3:3
5.1 lnc-TBPL1-69:14
5.2 lnc-TNFAIP3-3:3