Transcript: lnc-TNFAIP3-3:13

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-3:13 
LNCipedia gene ID: lnc-TNFAIP3-3
Ensembl Gene ID: ENSG00000230533
Ensembl Transcript ID: ENST00000642830
Location (hg38): chr6:137657998-137674554
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 851 bp
Exons: 7
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642830.1
Alternative gene names: ENSG00000230533.3; AL356234.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.2817 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-3:13 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-TBPL1-69:7
5.1 lnc-TBPL1-69:7
5.2 lnc-TNFAIP3-3:13