Transcript: lnc-TNFAIP3-3:12

Basic information

LNCipedia transcript ID: lnc-TNFAIP3-3:12 
LNCipedia gene ID: lnc-TNFAIP3-3
Ensembl Gene ID: ENSG00000230533
Ensembl Transcript ID: ENST00000635999
Location (hg38): chr6:137673383-137763984
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 601 bp
Exons: 3
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635999.1
Alternative gene names: ENSG00000230533.2; RP11-95M15.1; AL357060.1; ENSG00000230533.3; AL356234.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.2817 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP3-3:12 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TNFAIP3-3:12
5.0 lnc-TNFAIP3-3:12
5.1 lnc-TBPL1-69:10
5.2 lnc-TNFAIP3-3:12