Transcript: lnc-TNC-2:1

Basic information

LNCipedia transcript ID: lnc-TNC-2:1 
LNCipedia gene ID: lnc-TNC-2
Ensembl Gene ID: ENSG00000234692
Ensembl Transcript ID: ENST00000444701
Location (hg38): chr9:115252538-115254251
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 427 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444701; ENST00000444701.1; RP11-445L6.3-001; OTTHUMT00000053789.1; NONHSAT134409
Alternative gene names: ENSG00000234692; RP11-445L6.3; ENSG00000234692.1; OTTHUMG00000020547.1; AL355601.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.9098 non-coding 
CPAT coding probability 4.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNC-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNC-2:1
3.1 lnc-TNC-2:1
4.0 lnc-TNC-2:1
4.1 lnc-TNC-2:1
5.0 lnc-TNC-2:1
5.1 lnc-TNFSF8-8:6
5.2 lnc-TNC-2:1