Transcript: lnc-TMTC3-5:18

Basic information

LNCipedia transcript ID: lnc-TMTC3-5:18 
LNCipedia gene ID: lnc-TMTC3-5
Location (hg38): chr12:90107739-90112289
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 436 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000548722; ENST00000548722.1; RP11-567C2.1-001; OTTHUMT00000406988.1
Alternative gene names: ENSG00000257194; RP11-567C2.1; ENSG00000257194.1; OTTHUMG00000170042.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.6242 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMTC3-5:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMTC3-5:2
3.1 lnc-TMTC3-6:2
4.0 lnc-TMTC3-6:2
4.1 lnc-TMTC3-5:18
5.0 lnc-TMTC3-5:18
5.1 lnc-TMTC3-5:18
5.2 lnc-TMTC3-5:18