Transcript: lnc-TMPRSS15-2:1

Basic information

LNCipedia transcript ID: lnc-TMPRSS15-2:1 
LNCipedia gene ID: lnc-TMPRSS15-2
Ensembl Gene ID: ENSG00000227330
Ensembl Transcript ID: ENST00000432412
Location (hg38): chr21:18022370-18114904
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 478 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432412; ENST00000432412.1; AP000998.2-001; OTTHUMT00000158230.1; NONHSAT081306
Alternative gene names: ENSG00000227330; AP000998.2; ENSG00000227330.1; OTTHUMG00000074517.1; AF130417.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.2524 non-coding 
CPAT coding probability 6.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS15-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMPRSS15-2:1
3.1 lnc-TMPRSS15-2:1
4.0 lnc-TMPRSS15-2:1
4.1 lnc-TMPRSS15-2:1
5.0 lnc-TMPRSS15-2:1
5.1 lnc-N6AMT1-76:1
5.2 lnc-TMPRSS15-2:1