Transcript: lnc-TMEM88B-3:8

Basic information

LNCipedia transcript ID: lnc-TMEM88B-3:8 
LNCipedia gene ID: lnc-TMEM88B-3
Ensembl Gene ID: ENSG00000224870
Ensembl Transcript ID: ENST00000572242
Location (hg38): chr1:1399806-1402033
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2228 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT000308; ENST00000572242.1
Alternative gene names: ENSG00000224870.6; RP4-758J18.2; AL391244.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4327 non-coding 
CPAT coding probability 6.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM88B-3:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM88B-3:8
4.0 lnc-TMEM88B-3:8
4.1 lnc-TMEM88B-3:8
5.0 lnc-TMEM88B-3:8
5.1 lnc-VAMP3-102:10
5.2 lnc-TMEM88B-3:8