Transcript: lnc-TMEM88B-3:7

Basic information

LNCipedia transcript ID: lnc-TMEM88B-3:7 
LNCipedia gene ID: lnc-TMEM88B-3
RefSeq ID: NR_015434
Location (hg38): chr1:1399530-1402046
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1748 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_015434; NR_015434.1
Alternative gene names: LOC148413


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score 15.4327 non-coding 
CPAT coding probability 30.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM88B-3:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM88B-3:7
4.0 lnc-TMEM88B-3:7
4.1 lnc-TMEM88B-3:7
5.0 lnc-TMEM88B-3:7
5.1 lnc-VAMP3-102:6
5.2 lnc-TMEM88B-3:7