Transcript: lnc-TMEM88B-3:5

Basic information

LNCipedia transcript ID: lnc-TMEM88B-3:5 
LNCipedia gene ID: lnc-TMEM88B-3
Ensembl Gene ID: ENSG00000224870
Ensembl Transcript ID: ENST00000453521
Location (hg38): chr1:1400419-1402046
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 858 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453521; NONHSAT000309; ENST00000453521.1
Alternative gene names: ENSG00000239298; RP4-758J18.3; ENSG00000224870.6; RP4-758J18.2; AL391244.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4327 non-coding 
CPAT coding probability 6.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM88B-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM88B-2:5
3.1 lnc-TMEM88B-3:5
4.0 lnc-TMEM88B-3:5
4.1 lnc-TMEM88B-3:5
5.0 lnc-TMEM88B-3:5
5.1 lnc-VAMP3-102:11
5.2 lnc-TMEM88B-3:5