Transcript: lnc-TMEM88B-2:2

Basic information

LNCipedia transcript ID: lnc-TMEM88B-2:2 
LNCipedia gene ID: lnc-TMEM88B-2
Location (hg38): chr1:1421723-1423281
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 861 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT000318
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6123 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM88B-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM88B-2:2
4.0 lnc-TMEM88B-2:2
4.1 lnc-TMEM88B-2:2
5.0 lnc-TMEM88B-2:2
5.1 lnc-VAMP3-99:5
5.2 lnc-TMEM88B-2:2