Transcript: lnc-TMEM70-1:9

Basic information

LNCipedia transcript ID: lnc-TMEM70-1:9 
LNCipedia gene ID: lnc-TMEM70-1
Location (hg38): chr8:73879046-73882733
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2071 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000099396.1|HBMT00001395531.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -129.4994 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM70-1:9 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM70-1:9
5.0 lnc-TMEM70-1:9
5.1 lnc-SULF1-39:3
5.2 lnc-TMEM70-1:9