Transcript: lnc-TMEM35B-1:5

Basic information

LNCipedia transcript ID: lnc-TMEM35B-1:5 
LNCipedia gene ID: lnc-TMEM35B-1
RefSeq ID: NR_037869
Location (hg38): chr1:34975699-34978706
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1887 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000311990.4; RP11-244H3.1-001; OTTHUMT00000011545.3; NR_037869; NR_037869.1
Alternative gene names: ENSG00000241014.1; RP11-244H3.1; OTTHUMG00000004046.3; AC114490.1; LOC653160


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6682 non-coding 
CPAT coding probability 99.84% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM35B-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZMYM6-1:2
4.0 lnc-ZMYM6-1:2
4.1 lnc-ZMYM6-1:2
5.0 lnc-ZMYM6-1:2
5.1 lnc-COL8A2-40:5
5.2 lnc-TMEM35B-1:5