Transcript: lnc-TMEM35A-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM35A-1:1 
LNCipedia gene ID: lnc-TMEM35A-1
Location (hg38): chrX:101042584-101043705
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 401 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000443801.1; TRMT2B-AS1-001; OTTHUMT00000057507.1; NONHSAT137911
Alternative gene names: ENSG00000225839.1; TRMT2B-AS1; OTTHUMG00000022015.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.4714 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM35A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM35-1:1
4.0 lnc-TMEM35-1:1
4.1 lnc-TMEM35-1:1
5.0 lnc-TMEM35-1:1
5.1 lnc-TEX13C-267:1
5.2 lnc-TMEM35A-1:1