Transcript: lnc-TMEM30B-9:1

Basic information

LNCipedia transcript ID: lnc-TMEM30B-9:1 
LNCipedia gene ID: lnc-TMEM30B-9
RefSeq ID: NR_045406
Location (hg38): chr14:61747039-61749089
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2051 bp
Exons: 1
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT037281; NR_045406; NR_045406.1
Alternative gene names: 3'aHIF-1A; aHIF; HIF1A-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.0733 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM30B-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM30B-7:1
4.0 HIF1A-AS2:1
4.1 HIF1A-AS2:1
5.0 HIF1A-AS2:1
5.1 lnc-DHRS7-19:1
5.2 lnc-TMEM30B-9:1