Transcript: lnc-TMEM260-2:1

Basic information

LNCipedia transcript ID: lnc-TMEM260-2:1 
LNCipedia gene ID: lnc-TMEM260-2
Ensembl Gene ID: ENSG00000258703
Ensembl Transcript ID: ENST00000555316
Location (hg38): chr14:56759379-56765757
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 807 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555316; ENST00000555316.1; RP11-1085N6.4-001; OTTHUMT00000411521.1; NONHSAT037061
Alternative gene names: ENSG00000258703; RP11-1085N6.4; ENSG00000258703.1; OTTHUMG00000171069.1; AL161757.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.6072 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM260-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf101-2:1
3.1 lnc-C14orf101-2:1
4.0 lnc-C14orf101-2:1
4.1 lnc-C14orf101-2:1
5.0 lnc-C14orf101-2:1
5.1 lnc-AP5M1-4:1
5.2 lnc-TMEM260-2:1