Transcript: lnc-TMEM255B-5:23

Basic information

LNCipedia transcript ID: lnc-TMEM255B-5:23 
LNCipedia gene ID: lnc-TMEM255B-5
Ensembl Gene ID: ENSG00000229373
Ensembl Transcript ID: ENST00000426859
Location (hg38): chr13:113895103-113921317
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1607 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426859; ENST00000426859.1; LINC00452-001; OTTHUMT00000045945.1
Alternative gene names: ENSG00000229373; RP11-199F6.8; ENSG00000229373.2; LINC00452; OTTHUMG00000017394.1; ENSG00000229373.4; ENSG00000229373.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.3051 non-coding 
CPAT coding probability 98.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM255B-5:23 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM70B-4:1
3.1 lnc-FAM70B-5:1
4.0 lnc-FAM70B-5:1
4.1 lnc-FAM70B-5:1
5.0 lnc-FAM70B-5:1
5.1 lnc-TMEM255B-5:4
5.2 lnc-TMEM255B-5:23