Transcript: lnc-TMEM238L-16:7

Basic information

LNCipedia transcript ID: lnc-TMEM238L-16:7 
LNCipedia gene ID: lnc-TMEM238L-16
Location (hg38): chr17:10794910-10803703
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1137 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00025560
Alternative gene names: XLOC_012389; linc-TMEM220-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.4084 non-coding 
CPAT coding probability 18.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM238L-16:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIRT-1:2
3.1 lnc-PIRT-1:4
4.0 LINC00675:5
4.1 LINC00675:5
5.0 LINC00675:5
5.1 lnc-GAS7-16:7
5.2 lnc-TMEM238L-16:7