Transcript: lnc-TMEM206-5:6

Basic information

LNCipedia transcript ID: lnc-TMEM206-5:6 
LNCipedia gene ID: lnc-TMEM206-5
Location (hg38): chr1:212225277-212233362
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 329 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001802; NONHSAT009352
Alternative gene names: XLOC_001191; linc-INTS7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.6359 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM206-5:6 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM206-4:6
3.1 lnc-TMEM206-5:6
4.0 lnc-TMEM206-5:6
4.1 lnc-TMEM206-5:6
5.0 lnc-TMEM206-5:6
5.1 lnc-IRF6-44:16
5.2 lnc-TMEM206-5:6