Transcript: lnc-TMEM183A-5:5

Basic information

LNCipedia transcript ID: lnc-TMEM183A-5:5 
LNCipedia gene ID: lnc-TMEM183A-5
Location (hg38): chr1:202861754-202875241
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2321 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234996.3|ENST00000456105.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
IITNWDDMEK 100% sense-1
Lee translation initiation sites non-coding 
PhyloCSF score 49.8557 non-coding 
CPAT coding probability 48.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM183A-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-480I12.4.1-5:7
5.0 lnc-RP11-480I12.4.1-5:7
5.1 lnc-ADORA1-8:5
5.2 lnc-TMEM183A-5:5