Transcript: lnc-TMEM178A-1:29

Basic information

LNCipedia transcript ID: lnc-TMEM178A-1:29 
LNCipedia gene ID: lnc-TMEM178A-1
Ensembl Gene ID: ENSG00000231312
Ensembl Transcript ID: ENST00000438649
Location (hg38): chr2:39514146-39599539
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1901 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438649.1; AC007246.3-004; OTTHUMT00000325725.1; ENST00000438649.5
Alternative gene names: ENSG00000231312.2; AC007246.3; OTTHUMG00000152299.2; ENSG00000231312.6; AC007388.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.0022 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM178A-1:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM178-1:8
4.0 lnc-TMEM178-1:8
4.1 lnc-TMEM178-1:8
5.0 lnc-TMEM178-1:8
5.1 lnc-RASGRP3-51:29
5.2 lnc-TMEM178A-1:29