Transcript: lnc-TMEM174-1:4

Basic information

LNCipedia transcript ID: lnc-TMEM174-1:4 
LNCipedia gene ID: lnc-TMEM174-1
Ensembl Gene ID: ENSG00000249743
Ensembl Transcript ID: ENST00000503403
Location (hg38): chr5:73291590-73294934
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 445 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009420; ENST00000503403; ENST00000503403.1; RP11-60A8.1-004; OTTHUMT00000369162.1; NONHSAT102112
Alternative gene names: XLOC_004423; linc-BTF3-5; ENSG00000249743; RP11-60A8.1; ENSG00000249743.1; OTTHUMG00000162463.3; ENSG00000249743.5; AC116345.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.7413 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM174-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM174-1:4
3.1 lnc-TMEM174-1:4
4.0 lnc-TMEM174-1:4
4.1 lnc-TMEM174-1:4
5.0 lnc-TMEM174-1:4
5.1 lnc-MAP1B-18:11
5.2 lnc-TMEM174-1:4