Transcript: lnc-TMEM132E-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM132E-1:1 
LNCipedia gene ID: lnc-TMEM132E-1
Ensembl Gene ID: ENSG00000225582
Ensembl Transcript ID: ENST00000447729
Location (hg38): chr17:34479312-34479928
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 321 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025167; ENST00000447729; ENST00000447729.1; AC011193.1-002; OTTHUMT00000256096.1; NONHSAT053028
Alternative gene names: XLOC_012176; linc-TMEM132E-1; ENSG00000225582; AC011193.1; ENSG00000225582.1; OTTHUMG00000132738.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -606.6586 non-coding 
CPAT coding probability 6.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM132E-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132E-1:1
3.1 lnc-TMEM132E-1:1
4.0 lnc-TMEM132E-1:1
4.1 lnc-TMEM132E-1:1
5.0 lnc-TMEM132E-1:1
5.1 lnc-NSRP1-110:1
5.2 lnc-TMEM132E-1:1