Transcript: lnc-TMEM132B-4:10

Basic information

LNCipedia transcript ID: lnc-TMEM132B-4:10 
HGNC Gene Symbol: lnc-TMEM132B-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2467
Ensembl Gene ID: ENSG00000284848
Ensembl Transcript ID: ENST00000542804
Location (hg38): chr12:126168235-126171666
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 637 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542804; ENST00000542804.1; RP1-116K23.1-001; OTTHUMT00000399917.1; NONHSAT031768
Alternative gene names: ENSG00000256763; RP1-116K23.1; ENSG00000256763.1; OTTHUMG00000168500.1; LINC02467; ENSG00000284848.1; LINC02359


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.4877 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM132B-4:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132B-4:10
3.1 lnc-TMEM132B-4:10
4.0 lnc-TMEM132B-4:10
4.1 lnc-TMEM132B-4:10
5.0 lnc-TMEM132B-4:10
5.1 lnc-RFLNA-27:21
5.2 lnc-TMEM132B-4:10