Transcript: lnc-TMCO2-1:1

Basic information

LNCipedia transcript ID: lnc-TMCO2-1:1 
LNCipedia gene ID: lnc-TMCO2-1
Location (hg38): chr1:40282314-40283505
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 451 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435785.1; RP1-39G22.5-001; OTTHUMT00000015772.1; NONHSAT002629
Alternative gene names: ENSG00000225627.1; RP1-39G22.5; OTTHUMG00000005766.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.0404 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMCO2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMCO2-1:1
4.0 lnc-TMCO2-1:1
4.1 lnc-TMCO2-1:1
5.0 lnc-TMCO2-1:1
5.1 lnc-TMCO2-1:1
5.2 lnc-TMCO2-1:1