Transcript: lnc-TM6SF1-2:1

Basic information

LNCipedia transcript ID: lnc-TM6SF1-2:1 
LNCipedia gene ID: lnc-TM6SF1-2
Location (hg38): chr15:83207903-83228197
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1468 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000500581; TCONS_00023269; NONHSAT047900
Alternative gene names: ENSG00000245208; XLOC_011336; linc-SH3GL3; AC103876.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.3407 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM6SF1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TM6SF1-1:1
3.1 lnc-TM6SF1-2:1
4.0 lnc-TM6SF1-2:1
4.1 lnc-TM6SF1-2:1
5.0 lnc-TM6SF1-2:1
5.1 lnc-FAM103A1-8:1
5.2 lnc-TM6SF1-2:1