Transcript: lnc-TM4SF4-5:2

Basic information

LNCipedia transcript ID: lnc-TM4SF4-5:2 
LNCipedia gene ID: lnc-TM4SF4-5
Location (hg38): chr3:149442984-149444148
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1165 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000062183.1|FTMT21200007268.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -100.4491 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM4SF4-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TM4SF4-5:2
5.0 lnc-TM4SF4-5:2
5.1 lnc-TM4SF4-5:2
5.2 lnc-TM4SF4-5:2