Transcript: lnc-TLR10-3:2

Basic information

LNCipedia transcript ID: lnc-TLR10-3:2 
LNCipedia gene ID: lnc-TLR10-3
Ensembl Gene ID: ENSG00000271958
Ensembl Transcript ID: ENST00000515436
Location (hg38): chr4:38618265-38619437
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 376 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT096048; ENST00000515436.3
Alternative gene names: ENSG00000271958.1; RP11-617D20.2; AC021860.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -332.7001 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLR10-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC021860.1-1:2
4.0 lnc-AC021860.1-1:2
4.1 lnc-AC021860.1-1:2
5.0 lnc-AC021860.1-1:2
5.1 lnc-GABRA4-59:2
5.2 lnc-TLR10-3:2